AIIAGMT

A free tagger by AIIA Lab for gene mention recognition

This named entity recognition system is developed and maintained by the research team from the AIIA Lab, Institute of Information Science, Academia Sinica, Taiwan and I-Fang Chung's Lab at the Institute of Bioinformatics, National Yang-Ming University, Taiwan. Based on the conditional random field model (CRF), it ranked 2nd and achieved 86.83% of F-score in the gene mention tagging (GM) task in the BioCreative II challenge evaluation. We suggest you can read this paper published in the ISMB'08 for better understanding of it.

We also provide a Perl Module called AIIA::GMT that you can use to call this service from a remote site through XML-RPC interface.

The online service is released under the Creative Commons Attribution 2.5. You are welcome to use it under the terms of the licence for research or commercial purposes, however please acknowledge its use with a citation:

Chun-Nan Hsu, Yu-Ming Chang, Cheng-Ju Kuo, Yu-Shi Lin, Han-Shen Huang and I-Fang Chuang. Integrating High Dimensional Bi-directional Parsing Models for Gene Mention Tagging. Bioinformatics 24(13):i286-i294

If you have any other question or comment, please contact us.